PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zpz_sc00523.1.g00090.1.sm.mkhc
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family WRKY
Protein Properties Length: 338aa    MW: 36657.3 Da    PI: 8.1584
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zpz_sc00523.1.g00090.1.sm.mkhcgenomeZGDView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY955.3e-30180239159
                                     ---SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
                            WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 
                                     ++Dgy+WrKYGqK+ k++++pr+Y+rC++a  Cpvkkkv+rsa+d+++++ tYegeHnh 
  Zpz_sc00523.1.g00090.1.sm.mkhc 180 VKDGYQWRKYGQKVTKDNPCPRAYFRCSFApACPVKKKVQRSADDNTILVATYEGEHNHG 239
                                     58***************************99****************************5 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5081126.199175241IPR003657WRKY domain
Gene3DG3DSA:2.20.25.803.1E-29179241IPR003657WRKY domain
SuperFamilySSF1182906.28E-26179241IPR003657WRKY domain
SMARTSM007743.7E-35180240IPR003657WRKY domain
PfamPF031065.0E-25181238IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 338 aa     Download sequence    Send to blast
MEPWIGSQPS LSLDLHAGHH APAVVAMVKP KTLVEERNFL PLKKDPEVAA LESELQRMGE  60
ENRRLSEVLR AAAAQYEELR GQYAEMVAAG ANNNGGAGNP SFASEGVSVS PSRKRKSEDS  120
LETAPPATHL HHAAGPGALP YQMECTSGEP CRRVRDREEC KLKVSKLYVH ADPSDLSLVV  180
KDGYQWRKYG QKVTKDNPCP RAYFRCSFAP ACPVKKKVQR SADDNTILVA TYEGEHNHGQ  240
PPPSQPQHQQ HDGSSGVSKT AAKPPSPPQA SPVAAPPALH HQQQKQEVLA GEPVASELVR  300
RNLAEQMAVT LTRDPSFKAA LATALSGRIL ELSTTKDS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ayd_A2e-21165242175WRKY transcription factor 1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1111116SRKRKS
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankFP0923801e-101FP092380.1 Phyllostachys edulis cDNA clone: bphylf003o20, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004951681.11e-146PREDICTED: probable WRKY transcription factor 40
TrEMBLF2D8Q71e-147F2D8Q7_HORVD; Predicted protein
TrEMBLQ6QHF41e-147Q6QHF4_HORVU; WRKY transcription factor
STRINGMLOC_60890.11e-146(Hordeum vulgare)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP182238103
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G80840.15e-51WRKY DNA-binding protein 40